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...cacagaaattgttgaggcttgtcaacaaaaaaaggcatgatactgtagttacattccttctcattggaggtcgctaatgttttttttttttttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAA
species | Oryza sativa |
transcript | LOC_Os05g03430.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|86481066|gb|CI123699.1|CI123699
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|88513466|gb|CI440972.1|CI440972
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|88284346|gb|CI405792.1|CI405792
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|88235424|gb|CI236626.1|CI236626
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|94362517|gb|CI052383.1|CI052383
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|87015001|gb|CI273399.1|CI273399
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|88196940|gb|CI196642.1|CI196642
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|218484827|gb|FG958208.1|FG958208
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTAACTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|87027311|gb|CI269986.1|CI269986
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|12622265|gb|AU172478.1|AU172478
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|86478846|gb|CI121479.1|CI121479
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|89192803|gb|CI050101.1|CI050101
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGEST: gi|88513083|gb|CI440589.1|CI440589
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
EST: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATG GTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
genomic: TCAAGTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGATGgtgagcataa ... tttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTG
tagttacattccttctcattggaggtcgctaatgttttttttttttttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAA
cgctaat putative branch site (score: 3)
tgtttttttttttttt CT-rich tract
taatgttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagaaattgttgaggcttgtcaacaaaaaaaggcatgatactgtagttacattccttctcattggaggtcgctaatgttttttttttttttctgttagGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA