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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcatatgattcatttattgtaacaacaaaatgtgtttgatttatttctaatgatgatttggcattttattttctgcagAGATTTTTCTTACAACCAGCTTTCAGGATATCTCCCTTCTTGGGTTAGTGGGAAAGATTTACAATT

Basic information

species Oryza sativa
transcript LOC_Os04g52606.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52606.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
gtatgttcatatgattca--tttattgtaacaacaaaatgtgtttgatttatttctaatgatgatttggcattttattttctgcagAGATTTTTCTTACAACCAGCTTTCAGGATATCTCCCTTCTTGGGTTAGTGGGAAAGATTTACAATT----------------------------------
||||||   |    | ||  ||| ||    ||| ||||   |   |   | | |||| | |  ||||  | |||   |||||| ||||||||||||||||||||||| |||||  |  | |||||||||  || |  |||  |||| ||| |                                  
gtatgtcattgaagtccaattttgtttgtgcaataaaagcagggaggcatttatcta-taac-atttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaaaatgtgtttgatttatttctaatgatgatttggcattttattttctgcagAGATTTTTCTTACAACCAGCTTTCAGGATATCTCCCTTCTTGGGTTAGTGGGAAAGATTTACAATT
                     ttctaat  putative branch site (score: 2)
                                        ttttattttct  putative PPT
               atttatttctaatgat  TA-rich tract