1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aatttatcgcatttcctgctacattgcaatttaatacattgttctgattcattagtgcatctattccattatctaaaaaaatgtatccaatttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTEST: gi|58609050|gb|CK037083.1|CK037083
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTEST: gi|29670926|gb|CB667201.1|CB667201
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTEST: gi|33681707|gb|CF309946.1|CF309946
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGTACTEST: gi|66920748|gb|CX107596.1|CX107596
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTEST: gi|58606846|gb|CK034879.1|CK034879
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
EST: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAG CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
genomic: CCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGgtatgtacac ... tttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACT
gattcattagtgcatctattccattatctaaaaaaatgtatccaatttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG
atctaaa putative branch site (score: 37)
tttctttc putative PPT
tattccattatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttatcgcatttcctgctacattgcaatttaatacattgttctgattcattagtgcatctattccattatctaaaaaaatgtatccaatttctttcagCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - -ctgctac
- - - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatcc