1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgggtgttggaattgtgcatgcttgcttttcaacctatcgaagaattagaatttgtggatcattcgttttatcaattgttcttgatttgttccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTT
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88264862|gb|CI367513.1|CI367513
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: GAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|89176352|gb|CI043373.1|CI043373
genomic: GAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|29616209|gb|CB621221.1|CB621221
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88253771|gb|CI352397.1|CI352397
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|86887329|gb|CI313232.1|CI313232
genomic: AGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88265057|gb|CI368831.1|CI368831
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGAT-GTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|29636734|gb|CB641743.1|CB641743
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88902590|gb|CI088128.1|CI088128
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88276805|gb|CI395968.1|CI395968
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|27549049|gb|CA766863.2|CA766863
genomic: AGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|88961566|gb|CI096841.1|CI096841
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCAEST: gi|29676261|gb|CB672536.1|CB672536
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
EST: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATG GTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
genomic: AAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttca ... tccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCA
ttagaatttgtggatcattcgttttatcaattgttcttgatttgttccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTT
tcttgat putative branch site (score: 30)
tttgttccttc CT-rich tract
ttttatcaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtgttggaattgtgcatgcttgcttttcaacctatcgaagaattagaatttgtggatcattcgttttatcaattgttcttgatttgttccttcgcagGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTT
- ggtgttg
- - - - - - - -tgcatgc
- - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct