Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagacctttttttttttttagaacaaagaccttctcttgtagcctttcatatctcctctttggcagacgacttctctagtttccaccgttctggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTCGCCCAAAGCCATCCAGAACG

Basic information

species Oryza sativa
transcript LOC_Os04g40040.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g40040.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G147884_T01 (Zea mays), 3'ss of exon 11
gtaaagacctt-tttttttttttagaacaaagaccttctcttgtagcctttcatatctcctctttggcagacgacttctcta-gtttccaccgttctggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTCGCCCAAAGCCATCCAGAACG
|||    | ||  ||||||||||  |  | |  |  ||    | ||     |||     | |||||     |  |||| | | |           ||   |||    || ||     || | ||  |  ||| |       | |  | ||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||| || ||  |||||||||||||||||||||| |||||||||||  
gtatcagctttactttttttttttcagtatatcctgtcataggcagtgaaccatcgggaccctttgtt--gcttcttcgcaaagagatggttagcctaactttggtcgtttc----taatggctaatgatgtttc------tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGTCCGATGCGGATGTCAAGGAAGCCGAGTCGCCCAAGGCCATCCAGAATA

upper sequence: LOC_Os04g40040.1 (Oryza sativa), 3'ss of exon 12
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 3'ss of exon 11
gtaaagacctttttttttttttagaacaaagaccttctcttgtagcctttcatatctcctctttggcaga-cgacttctctagtttccaccgttctggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTCGCCCAAAGCCATCCAG-AACG-
                                               || ||| |     ||   |  |  |   || ||| ||       | |   ||  ||  | ||     |  |  || || | | |  || ||   |   | |||||||||||||||||||||||||| || ||||| ||||| || ||   | | |  ||    ||    |||||    ||   |   |   | ||   | | || 
-----------------------------------------------ttgcatgtagtgactccagaggctcagtttgtctggtagaatatgcttccgtgcttgaaataatgtattgac-ccagtgtttttgatggttg--tgggtgcagCCACATGGGTTCTTCAACTGCTCACCTGCGGTGGACGTCCCCCCGAACGCTTGTGAATTGGATGGGAAGGACAATGA--TGTGAAGGACAATGGGGTAGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180882|gb|CI044965.1|CI044965
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86481940|gb|CI124573.1|CI124573
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86491563|gb|CI134196.1|CI134196
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88903400|gb|CI088938.1|CI088938
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTAATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|14571357|gb|BI118725.1|BI118725
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89194500|gb|CI116937.1|CI116937
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86526176|gb|CI166382.1|CI166382
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88221322|gb|CI221278.1|CI221278
EST:     TGGAGGGCTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTACAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89182221|gb|CI113590.1|CI113590
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88439052|gb|CI551903.1|CI551903
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88245559|gb|CI245408.1|CI245408
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|58652700|gb|CK041380.1|CK041380
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87032740|gb|CI270375.1|CI270375
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88247722|gb|CI247571.1|CI247571
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|58653590|gb|CK042270.1|CK042270
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86603813|gb|CI114587.1|CI114587
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86491853|gb|CI134486.1|CI134486
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|58671535|gb|CK060221.1|CK060221
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|29663381|gb|CB659656.1|CB659656
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87016691|gb|CI275693.1|CI275693
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86430039|gb|CI082462.1|CI082462
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88838834|gb|CI012710.1|CI012710
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86414256|gb|CI068659.1|CI068659
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGTGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86597754|gb|CI274745.1|CI274745
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|33795935|gb|CF323835.1|CF323835
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86537022|gb|CI177228.1|CI177228
EST:     GCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: GCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86592986|gb|CI270543.1|CI270543
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88546045|gb|CI475653.1|CI475653
EST:     CAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: CAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88991168|gb|CI108555.1|CI108555
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88965812|gb|CI006656.1|CI006656
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86596922|gb|CI270718.1|CI270718
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|29673127|gb|CB669402.1|CB669402
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88902557|gb|CI088095.1|CI088095
EST:     AGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: AGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86854704|gb|CI258995.1|CI258995
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|27577624|gb|CB000319.1|CB000319
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86478701|gb|CI121334.1|CI121334
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86858466|gb|CI273056.1|CI273056
EST:     AGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: AGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86507346|gb|CI149979.1|CI149979
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88833171|gb|CI076654.1|CI076654
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTTATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|25803373|gb|CA759334.1|CA759334
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|14571287|gb|BI118655.1|BI118655
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|58673835|gb|CK062521.1|CK062521
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88244917|gb|CI242768.1|CI242768
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87018139|gb|CI275953.1|CI275953
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88842282|gb|CI081538.1|CI081538
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGACGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|9866161|gb|AU101911.1|AU101911
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87037871|gb|CI192493.1|CI192493
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89176975|gb|CI111175.1|CI111175
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89181366|gb|CI112872.1|CI112872
EST:     GAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: GAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88489162|gb|CI426434.1|CI426434
EST:     CGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: CGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88993495|gb|CI110316.1|CI110316
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|29675869|gb|CB672144.1|CB672144
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|29665205|gb|CB661480.1|CB661480
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88830909|gb|CI079343.1|CI079343
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88247638|gb|CI247487.1|CI247487
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87027803|gb|CI274367.1|CI274367
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86435995|gb|CI107228.1|CI107228
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|29624652|gb|CB629663.1|CB629663
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88239926|gb|CI239088.1|CI239088
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88955760|gb|CI092049.1|CI092049
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89195766|gb|CI007185.1|CI007185
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86428092|gb|CI073189.1|CI073189
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGATCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86521183|gb|CI161389.1|CI161389
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTAATGCTCATG                         CCACATGGGTTCTTCAGCTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86493992|gb|CI136625.1|CI136625
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88829251|gb|CI074121.1|CI074121
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|89174304|gb|CI110502.1|CI110502
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88198565|gb|CI198415.1|CI198415
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88966393|gb|CI119528.1|CI119528
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|87020838|gb|CI269555.1|CI269555
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|33812564|gb|CF332170.1|CF332170
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|88202505|gb|CI200860.1|CI200860
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86437861|gb|CI119781.1|CI119781
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
EST: gi|86479656|gb|CI122289.1|CI122289
EST:     TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG                         CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC
genomic: TGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacct ... ttcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTCGCCCAAAGCCATCCAGAACG
                                       gtttaat  putative branch site (score: 4)
                                             ttcttttc  CT-rich tract
                                     ttgtttaattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagacctttttttttttttagaacaaagaccttctcttgtagcctttcatatctcctctttggcagacgacttctctagtttccaccgttctggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcagCCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTCGCCCAAAGCCATCCAGAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA