1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtccgttctttgtctctctgccctcctccatttttgacttatagttcaggactgtatttgcttgcttttttgcgccaacagccagatggttatagatttaattgagatgcgtggtgctcaaacatggcttcctttttacattatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGG
species | Oryza sativa |
transcript | LOC_Os03g63020.4 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCGTCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|86870386|gb|CI319492.1|CI319492
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: CTGTGCAGTCAG GTTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|29644979|gb|CB649986.1|CB649986
genomic: CTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|24468848|gb|CA305797.1|CA305797
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: ATTTGAAAATCCTCCTGTGCAGTCAGCAGEST: gi|86868376|gb|CI321678.1|CI321678
genomic: ATTTGAAAATCCTCCTGTGCAGT---CAGgtccgttctt ... tatttagc
EST: AAATCCTCCGGTCCAGTCAG GGTTTT-GCCTCTCGTTGCATCAGACCGCCCAATGGGCGATGTTCCAGCCAEST: gi|88835185|gb|CI370488.1|CI370488
genomic: AAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|89167683|gb|CI018289.1|CI018289
genomic: GCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|29663527|gb|CB659802.1|CB659802
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|34996388|gb|CF569133.1|CF569133
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCAEST: gi|29666009|gb|CB662284.1|CB662284
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGEST: gi|29666008|gb|CB662283.1|CB662283
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---CAGgtccgttctt ... tatttagc
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGEST: gi|29638287|gb|CB643296.1|CB643296
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---CAGgtccgttctt ... tatttagc
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|29656192|gb|CB652467.1|CB652467
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG CEST: gi|29656192|gb|CB652467.1|CB652467
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcag-
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG CEST: gi|29656192|gb|CB652467.1|CB652467
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcag-
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG CEST: gi|29613155|gb|CB618168.1|CB618168
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcag-
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTTGTTGCGTCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|86886525|gb|CI322757.1|CI322757
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GTACCCA-GATTT-AAAATCCTCCTCTCCAGTCAG GNTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|15858543|gb|BI811355.1|BI811355
genomic: GTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: TCCTCCTGTGCAGTCA- GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|33801021|gb|CF326384.1|CF326384
genomic: TCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|29633044|gb|CB638053.1|CB638053
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|33381337|gb|CF196680.1|CF196680
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCANNNNGGCCAATGGGCGATGTTCCAEST: gi|218497584|gb|FG955131.1|FG955131
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCGTCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|86435343|gb|CI106576.1|CI106576
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: AAATCCTCCTGTGCAGTCGG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|86896081|gb|CI330061.1|CI330061
genomic: AAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: TTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGEST: gi|86863868|gb|CI332862.1|CI332862
genomic: TTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---CAGgtccgttctt ... tatttagc
EST: CAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGEST: gi|29613395|gb|CB618408.1|CB618408
genomic: CAGGATTTGAAAATCCTCCTGTGCAGT---CAGgtccgttctt ... tatttagc
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCGTCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|29628841|gb|CB633852.1|CB633852
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTTTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCGTCAGACCGGCCAATGGGCGATGTTCCAGCCAEST: gi|8856640|gb|AU093958.1|AU093958
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
EST: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG GGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
genomic: GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGgtccgttctt ... tatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCA
tttaattgagatgcgtggtgctcaaacatggcttcctttttacattatttagcagGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGG
atttaat putative branch site (score: 4)
cttcctttttacatt putative PPT
tttttacattattta TA-rich tract