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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcaatcttgtactgttggctgtgttaaaaatgaagtgaaatcgtttcatcattcccatatgctaatgcttgtgcacatgaattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGT

Basic information

species Oryza sativa
transcript LOC_Os03g59020.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g59020.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G381744_T01 (Zea mays), 3'ss of exon 12
gtaagagcaatcttgtactgttggctgtgttaaaaatgaagtgaaatcgtttcatcattcccatatgctaatgcttgtgca-catgaattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGG------AATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGT
              |||    |       |||      || |    | ||||||    ||  |  ||  |||  |||   |  || || | | |||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||       |||||||| |||||||||| |     | | | || |   | |       
--------------gtatgacttctaagcttatgttctaaattcttttgtttcaaaggtcgta-gtggcaatatttgaataatataaactctccagATCATTATGGCAAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTGGCGGGATGGACGAGGATTAGTTTGATTATA-GTTGTTTTCTTTGTATCA-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88442069|gb|CI560310.1|CI560310
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88466692|gb|CI542269.1|CI542269
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58605902|gb|CK033935.1|CK033935
EST:     CTCTTAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|7332371|gb|AU085717.1|AU085717
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         NTCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89185790|gb|CI047659.1|CI047659
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88478270|gb|CI415541.1|CI415541
EST:     CTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88383227|gb|CI538255.1|CI538255
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88298405|gb|CI561198.1|CI561198
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88409323|gb|CI559421.1|CI559421
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88270335|gb|CI385593.1|CI385593
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88902882|gb|CI088420.1|CI088420
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58669197|gb|CK057883.1|CK057883
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|29667203|gb|CB663478.1|CB663478
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|29676290|gb|CB672565.1|CB672565
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89192845|gb|CI050143.1|CI050143
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89193289|gb|CI050587.1|CI050587
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58687966|gb|CK076653.1|CK076653
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88431251|gb|CI557231.1|CI557231
EST:     TCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGG
genomic: TCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGG-TTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGG
EST: gi|88452732|gb|CI560782.1|CI560782
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|94362404|gb|CI052399.1|CI052399
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|86431027|gb|CI083450.1|CI083450
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88441985|gb|CI557638.1|CI557638
EST:     CTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89181042|gb|CI045125.1|CI045125
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88457190|gb|CI531789.1|CI531789
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|86601030|gb|CI356787.1|CI356787
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88907562|gb|CI090356.1|CI090356
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58611454|gb|CK039166.1|CK039166
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88986543|gb|CI033686.1|CI033686
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCCAAGCCAGCAGGAGGGCCCAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89175803|gb|CI042824.1|CI042824
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89183625|gb|CI046190.1|CI046190
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88221299|gb|CI221255.1|CI221255
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88452702|gb|CI560752.1|CI560752
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58611185|gb|CK038897.1|CK038897
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|86427151|gb|CI072248.1|CI072248
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88269749|gb|CI381047.1|CI381047
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|86836241|gb|CI346228.1|CI346228
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|29616022|gb|CB621034.1|CB621034
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58689152|gb|CK077839.1|CK077839
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|58679992|gb|CK068679.1|CK068679
EST:     CTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|89192930|gb|CI050228.1|CI050228
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
EST: gi|88292106|gb|CI534900.1|CI534900
EST:     CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAG                         ATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA
genomic: CTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 74 (downstream exon)
Score: 49

GTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGgtaagagcaa ... aattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaatcgtttcatcattcccatatgctaatgcttgtgcacatgaattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGT
                         tgctaat  putative branch site (score: 49)
                                          atgaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagagcaatcttgtactgttggctgtgttaaaaatgaagtgaaatcgtttcatcattcccatatgctaatgcttgtgcacatgaattatgcagATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA