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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG

Basic information

species Oryza sativa
transcript LOC_Os03g52840.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 11
-----------------------------------------------------------------------------------aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctcttcaaa-----tttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
                                                                                     |  || |||||||||||    ||| |||      |  || |||| | || | ||||||| |  | ||||| ||  |  | || |||     ||   | | ||||| |||||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
gtaggataaaagtgtgtttcacgttttgtcatttttttatagatattagctattgctttatacatactagctacttttttgtacgtattatctaaatgtgctaaatagacaaa---acctacttgtttccagttctaatgccatgtctgaacaat-attgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 12
aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctctt------caaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
         ||  |  | ||   | |  |      |  ||||  || ||   | ||   | |  | ||| |   |  |  | |       ||||  ||    | |||| || ||||| || |||||  ||||||| || |||   || ||||||||||| ||||| ||||||||||| || ||||| || |||||||| || || |
------cattatgttggattcataaaagatagctgtaattttcatctaacagtaatattaaagtgagactaacgttcttttataaaaaaacaaaaatctctgtcagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAGCTAACAAAAACACAGTTCCAGGAGATGTGTCCGCTATGGTTCCTGGTG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 12
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 12
aatgatagctaaatgtgctttgcagataaacttgtttttt--tttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
 |  ||   ||| | |  | | | | ||| |||  |      |  ||  |||   ||    |     | | |||  |     |    ||||    | |  |||| |||||||| ||||||||||| || || ||||||   || || ||||||||||||||||| || ||||||||||||||||| || ||||| || || |
taaaatgtttaatttt--tgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 12
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 11
------------aatgatagctaaatgtgctttgcagataaact-tgtttt--tttttttcaaatttttatgccatatggggaca-attatcatcctcttcaaat--ttcatgtt------tagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
            ||   |  || | |    ||  || ||   |  |||| |  |||| | | | | |   |   |  |  |      |  | |||  |    |||  ||| |||       |||||  | || |||||||| ||||||   ||  | ||    |  ||||||||||||||||||||||| ||||| || ||||| || ||  ||||||| ||||
gtgtattctgcaaactcttcctcagtactgttatcacatgttccatgttctaattttctaccagtatgactattaattaagactgtgtcctgatctgcgatgaatggttcttgtcattgtgtagGGTGTGGACGGTTCAAGGGTGGAGCGAGTGATGGAGCTTGCCCACATTGCAGCAAACAAGAACACTGTTCCAGGAGATGTGTCTGCATTGGTACCTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691302|gb|CK079989.1|CK079989
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38474524|gb|CF958657.1|CF958657
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29641600|gb|CB646607.1|CB646607
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|38479794|gb|CF963883.1|CF963883
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29667992|gb|CB664267.1|CB664267
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|58692752|gb|CK081439.1|CK081439
EST:     CTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: CTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29687054|gb|CB683329.1|CB683329
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29678031|gb|CB674306.1|CB674306
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29614139|gb|CB619152.1|CB619152
EST:     ACAACCATTTAGTGGTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29613559|gb|CB618572.1|CB618572
EST:     ACAACCATTTAGTGGTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29621133|gb|CB626144.1|CB626144
EST:     ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29672939|gb|CB669214.1|CB669214
EST:     TCTCTGGTGGGACTGACAACCATNTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|4716856|gb|AU057972.1|AU057972
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38474897|gb|CF959030.1|CF959030
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29624607|gb|CB629618.1|CB629618
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29614629|gb|CB619642.1|CB619642
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29618932|gb|CB623944.1|CB623944
EST:     GGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29622695|gb|CB627706.1|CB627706
EST:     TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29638079|gb|CB643088.1|CB643088
EST:     TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|11442748|gb|BF430651.1|BF430651
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29675548|gb|CB671823.1|CB671823
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38476360|gb|CF960493.1|CF960493
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29629705|gb|CB634714.1|CB634714
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29687894|gb|CB684169.1|CB684169
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29662689|gb|CB658964.1|CB658964
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29621679|gb|CB626690.1|CB626690
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29664044|gb|CB660319.1|CB660319
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29646106|gb|CB651113.1|CB651113
EST:     TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29681407|gb|CB677682.1|CB677682
EST:     ACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: ACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|33663440|gb|CF294407.1|CF294407
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29646446|gb|CB651453.1|CB651453
EST:     TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38482519|gb|CF966548.1|CF966548
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTGGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29665919|gb|CB662194.1|CB662194
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29629706|gb|CB634715.1|CB634715
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|29687453|gb|CB683728.1|CB683728
EST:     AGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: AGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29613482|gb|CB618495.1|CB618495
EST:     GAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|58692040|gb|CK080727.1|CK080727
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29630143|gb|CB635152.1|CB635152
EST:     GGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: GGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|55410185|gb|CV722561.1|CV722561
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38472677|gb|CF956809.1|CF956809
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38478032|gb|CF962165.1|CF962165
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|38477716|gb|CF961849.1|CF961849
EST:     TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG                         GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: gi|428581|gb|D24733.1|D24733
EST:     GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: gi|29674140|gb|CB670415.1|CB670415
EST:     TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
                                        aaatttcatgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT