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...aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
species | Oryza sativa |
transcript | LOC_Os03g52840.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38474524|gb|CF958657.1|CF958657
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29641600|gb|CB646607.1|CB646607
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|38479794|gb|CF963883.1|CF963883
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29667992|gb|CB664267.1|CB664267
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|58692752|gb|CK081439.1|CK081439
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: CTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29687054|gb|CB683329.1|CB683329
genomic: CTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29678031|gb|CB674306.1|CB674306
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29614139|gb|CB619152.1|CB619152
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: ACAACCATTTAGTGGTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29613559|gb|CB618572.1|CB618572
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: ACAACCATTTAGTGGTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29621133|gb|CB626144.1|CB626144
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29672939|gb|CB669214.1|CB669214
genomic: ACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: TCTCTGGTGGGACTGACAACCATNTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|4716856|gb|AU057972.1|AU057972
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38474897|gb|CF959030.1|CF959030
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29624607|gb|CB629618.1|CB629618
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29614629|gb|CB619642.1|CB619642
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29618932|gb|CB623944.1|CB623944
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29622695|gb|CB627706.1|CB627706
genomic: GGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29638079|gb|CB643088.1|CB643088
genomic: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|11442748|gb|BF430651.1|BF430651
genomic: TACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29675548|gb|CB671823.1|CB671823
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38476360|gb|CF960493.1|CF960493
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29629705|gb|CB634714.1|CB634714
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29687894|gb|CB684169.1|CB684169
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29662689|gb|CB658964.1|CB658964
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29621679|gb|CB626690.1|CB626690
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29664044|gb|CB660319.1|CB660319
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29646106|gb|CB651113.1|CB651113
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29681407|gb|CB677682.1|CB677682
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: ACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|33663440|gb|CF294407.1|CF294407
genomic: ACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29646446|gb|CB651453.1|CB651453
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38482519|gb|CF966548.1|CF966548
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTGGCACAGEST: gi|29665919|gb|CB662194.1|CB662194
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29629706|gb|CB634715.1|CB634715
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|29687453|gb|CB683728.1|CB683728
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: AGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29613482|gb|CB618495.1|CB618495
genomic: AGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|58692040|gb|CK080727.1|CK080727
genomic: GAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29630143|gb|CB635152.1|CB635152
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|55410185|gb|CV722561.1|CV722561
genomic: GGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38472677|gb|CF956809.1|CF956809
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38478032|gb|CF962165.1|CF962165
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|38477716|gb|CF961849.1|CF961849
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG GGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAEST: gi|428581|gb|D24733.1|D24733
genomic: TCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAGgtaagacaaa ... tcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCA
EST: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGEST: gi|29674140|gb|CB670415.1|CB670415
genomic: GCAACTACTCCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
caaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
aaatttcatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgatagctaaatgtgctttgcagataaacttgtttttttttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT