1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctgaaacttccagagaggcagagagcgctgatgatgatctgttggttgtctgaccggctctttttcctttgttgactaagtacttccttttccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTACTTCCTTGCCGGCACAGAACATTATGCAA
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|58591069|gb|CF989377.1|CF989377
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: ATCAGAAATTACCAACATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCGTGGTCTTAEST: gi|7378334|gb|AU088605.1|AU088605
genomic: ATCAGAAATTACCAA-ATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|88960763|gb|CI382444.1|CI382444
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAACCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|29659984|gb|CB656259.1|CB656259
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|86851327|gb|CI312728.1|CI312728
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|88966473|gb|CI353025.1|CI353025
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|29638901|gb|CB643910.1|CB643910
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|89187385|gb|CI047452.1|CI047452
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: CAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|29668947|gb|CB665222.1|CB665222
genomic: CAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|27410195|gb|CA923265.1|CA923265
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: CAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|88271704|gb|CI387757.1|CI387757
genomic: CAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACAAAATGTACCAACCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|88461132|gb|CI550295.1|CI550295
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: ACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|29658595|gb|CB654870.1|CB654870
genomic: ACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTAEST: gi|89195454|gb|CI051567.1|CI051567
genomic: AATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
EST: GAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
genomic: GAAAGGCTTCAAAATgtaccatctc ... tccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTA
ttgtctgaccggctctttttcctttgttgactaagtacttccttttccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTACTTCCTTGCCGGCACAGAACATTATGCAA
tgttgac putative branch site (score: 11)
tacttccttttccatt putative PPT
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaaacttccagagaggcagagagcgctgatgatgatctgttggttgtctgaccggctctttttcctttgttgactaagtacttccttttccatttcagGAGAAGGTTCTTTGTAGGATTTGCTACGAGGGGGAGATATGCATGGTCTTACTTCCTTGCCGGCACAGAACATTATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - ctgttgg