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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactacatatgtctttttggtgacctatattggcaagaaactactggaatatcctatcgatatatgacttgcatatttctgtatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG

Basic information

species Oryza sativa
transcript LOC_Os03g45770.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g45770.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM5G814310_T01 (Zea mays), 3'ss of exon 3
gtatgactacat---atgtctttttggtgacctatattggcaagaaactactggaatatc-ctatcgatatatgacttgcatatttctgtatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG
|||||  |  ||   |  |||||||  ||||  | | |    |  ||||| ||  | ||  ||  || | ||||||||             |||| |||||||||| || ||||| || ||||| || || || |||||||| || || |||||||||||||||||||| || |||
gtatgtgtgtatcaaacttcttttttctgactga-actattgattaactaatgacacatttctggcgctttatgacttatgc---------tttaccagGCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58685897|gb|CK074584.1|CK074584
EST:     CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATG                         GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
genomic: CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactac ... tatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
EST: gi|58695202|gb|CK083889.1|CK083889
EST:     CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATG                         GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
genomic: CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactac ... tatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
EST: gi|2443167|gb|C74938.1|C74938
EST:     CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATG                         GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
genomic: CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactac ... tatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA
EST: gi|218491801|gb|FG954125.1|FG954125
EST:     CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATG                         GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGNGTTCATGCAACATCTAA
genomic: CTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactac ... tatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactactggaatatcctatcgatatatgacttgcatatttctgtatttatcagGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG
                                       tttctgt  CT-rich tract
                                    atatttctgtatttat  TA-rich tract