1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgttgtctgatcatgtgggttaaattaactatatgcatatttgacagaaccactgtattccactgaagtgaattcatcagggtttagattcttttttagagggaatatccatactcttgatatcaaaagtatttatttactttatttattctgcccacatgcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCCATGTTGTGGGATCAAATTACTGCTTCATGAATGTCTTTGAGGACAGAA
species | Oryza sativa |
transcript | LOC_Os03g42110.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCEST: gi|66912884|gb|CX099732.1|CX099732
genomic: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
EST: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCEST: gi|29612880|gb|CB617893.1|CB617893
genomic: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
EST: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCEST: gi|86426929|gb|CI072026.1|CI072026
genomic: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
EST: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCEST: gi|89175616|gb|CI042637.1|CI042637
genomic: CTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
EST: TTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCEST: gi|86836098|gb|CI346154.1|CI346154
genomic: TTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
EST: CTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG GGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
genomic: CTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAGgtttgttgtc ... gcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGC
cttgatatcaaaagtatttatttactttatttattctgcccacatgcattttcagGGTGAAGAATTTGTGAAACTGTTAAATGGTAGCAGCGTTCCTCACACACGCCATGTTGTGGGATCAAATTACTGCTTCATGAATGTCTTTGAGGACAGAA
tcttgat putative branch site (score: 18)
cattttc putative PPT
tatcaaaagtatttat TA-rich tract