1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgatggaaatgtttggctgcccagaataagatggacctgtttctcccatttatttacttcttcctgtcttctttaacttcaatggcttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAAAATGGGGGGATGATAACCACAAGTGGATTCGACCTGGACATCTTTTCA
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAEST: gi|8856279|gb|AU093597.1|AU093597
genomic: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
EST: GGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAEST: gi|218479236|gb|FG969139.1|FG969139
genomic: GGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
EST: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAEST: gi|29624755|gb|CB629766.1|CB629766
genomic: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
EST: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAEST: gi|29675057|gb|CB671332.1|CB671332
genomic: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
EST: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAEST: gi|29675056|gb|CB671331.1|CB671331
genomic: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
EST: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAG ATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
genomic: TTGTTATGGATCTTGGCTGTTCAATTAATCCGGCTATTGATATTGGCCAGgtatgatgga ... cttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTA
ttctcccatttatttacttcttcctgtcttctttaacttcaatggcttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAAAATGGGGGGATGATAACCACAAGTGGATTCGACCTGGACATCTTTTCA
ctttaac putative branch site (score: 3)
cttgtttc putative PPT
atttatttacttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatggaaatgtttggctgcccagaataagatggacctgtttctcccatttatttacttcttcctgtcttctttaacttcaatggcttgtttcagATTGAAGGAGGTTTTATCCAAGGATTAGGTTGGGCGGCCCTGGAAGAACTAAAATGGGGGGATGATAACCACAAGTGGATTCGACCTGGACATCTTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA