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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcttttctcagaactgctacattgtgcccattcttacagtaaaggggtgaaaataatgtggactttaacctctccacatttcagCCAAGAGATCTTGAGAATAACTTGCAAGAAAGGACAACACTTCAGGACACAAACATGATACTTGACTCGACCAACTGTATGAGAGTTGCTAGTACTCCTG

Basic information

species Oryza sativa
transcript LOC_Os03g02290.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58685677|gb|CK074364.1|CK074364
EST:     GACAGGAGCTCCTGGAAACACAGAGAACAGAGGCTATGCTTCAGATCAAG                         CCAAGAGATCTTGAGAATAACTTGCAAGAAAGGACAACACTTCAGGACACA
genomic: GACAGGAGCTCCTGGAAACACAGAGAACAGAGGCTATGCTTCAGATCAAGgtaagctctt ... cacatttcagCCAAGAGATCTTGAGAATAACTTGCAAGAAAGGACAACACTTCAGGACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttacagtaaaggggtgaaaataatgtggactttaacctctccacatttcagCCAAGAGATCTTGAGAATAACTTGCAAGAAAGGACAACACTTCAGGACACAAACATGATACTTGACTCGACCAACTGTATGAGAGTTGCTAGTACTCCTG
                                       cctctccacatttc  CT-rich tract
                  tgaaaataat  TA-rich tract