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gtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
species | Oryza sativa |
transcript | LOC_Os03g01750.6 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|29640153|gb|CB645162.1|CB645162
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGGCCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88689968|gb|CI734047.1|CI734047
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|58596756|gb|CK007284.1|CK007284
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88688614|gb|CI732190.1|CI732190
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|87007869|gb|CI296847.1|CI296847
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88688572|gb|CI732148.1|CI732148
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88689587|gb|CI733163.1|CI733163
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88688617|gb|CI732193.1|CI732193
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88963923|gb|CI031256.1|CI031256
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|27549021|gb|CA767031.2|CA767031
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88689057|gb|CI732633.1|CI732633
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88693785|gb|CI735362.1|CI735362
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
cctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
tcttcatt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT