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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttccatagttgctttatttgaattctacatcaatttgtggttgactttgaagatttacattccctttgtggcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAACAATGCACAAGGTTTCAACCCTTACCGAGAGATTAACTCATATGTCTGT

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89168902|gb|CI020983.1|CI020983
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|88841164|gb|CI080618.1|CI080618
EST:     GAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|38481521|gb|CF965610.1|CF965610
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|88288597|gb|CI663386.1|CI663386
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|58683626|gb|CK072313.1|CK072313
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|88571807|gb|CI663180.1|CI663180
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|117220171|gb|CT852510.1|CT852510
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|58673432|gb|CK062118.1|CK062118
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|29625052|gb|CB630063.1|CB630063
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
EST: gi|88327669|gb|CI657403.1|CI657403
EST:     GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAG                         GTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA
genomic: GAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAGGAATAGCCCAGgcaagtttcc ... gcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatcaatttgtggttgactttgaagatttacattccctttgtggcaattatagGTCACCCTGTATTAAGGCATTCACGCAGTTTACCTGAAACTGGCCGGGCAACAATGCACAAGGTTTCAACCCTTACCGAGAGATTAACTCATATGTCTGT
             ggttgac  putative branch site (score: 4)
                           atttacatt  TA-rich tract