1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caatcttcaactcttcctctttttttccttcgtttttgggacagtgaagatatctatcttagtcatagtctattgctgacagtgcattctgaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCTGTTATGTGTTAACCAGTTACACGTCGTTGATGCAATTGTATATTACAG
species | Oryza sativa |
transcript | LOC_Os02g44642.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TACACGAATAGTTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAG GTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCEST: gi|86602644|gb|CI357008.1|CI357008
genomic: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCC
EST: GCTGACCGTCTCAACAAAG GTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCEST: gi|86597779|gb|CI274770.1|CI274770
genomic: GCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCC
EST: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAG GTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCEST: gi|86834704|gb|CI340821.1|CI340821
genomic: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCC
EST: ACACGAATAAGTTCATTGATTATTTCAGAAGCTGACCGTCTCAACAAAG GTGAGCTA-GCCCCCACCAGGAACAGGCGTTGACTTCCATATTAGCCATGCEST: gi|218497285|gb|FG966102.1|FG966102
genomic: ACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTA-CCATGC
EST: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAA-G GTGAGCTATGCCCCCACCAGEST: gi|88247936|gb|CI247785.1|CI247785
genomic: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAG
EST: TACACGAATAATGTCATTAATTATTTCAGAAGCTGACCGTCTTAACAAAG GTGAGCTATGCCCCCATCAGGAACAGGCGTTGACTTCCATATTACCATGCC
genomic: TACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACAAAGgtacatccct ... gaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCC
gaagatatctatcttagtcatagtctattgctgacagtgcattctgaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCTGTTATGTGTTAACCAGTTACACGTCGTTGATGCAATTGTATATTACAG
tgctgac putative branch site (score: 13)
tatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcttcaactcttcctctttttttccttcgtttttgggacagtgaagatatctatcttagtcatagtctattgctgacagtgcattctgaatggacagGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCTGTTATGTGTTAACCAGTTACACGTCGTTGATGCAATTGTATATTACAG
- - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc