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gtaaaaaactagaccaaattatcaggttgcatatgttattgtggctctcctttctatgatgggttttgcttcattagattaaaaatgaaaactgtttaacctatgcataacggctttcttctctaccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGTTGCACCAAAAGAATTGACCTCATTTATAAGAGGAAAGCAAGAGCAGGT
species | Oryza sativa |
transcript | LOC_Os02g43350.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGANAAGGTTGAGGGCGAGGAGCTTCAEST: gi|29674692|gb|CB670967.1|CB670967
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCA
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|427407|gb|D23472.1|D23472
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: GCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|88231248|gb|CI231097.1|CI231097
genomic: GCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: CCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATG-AAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|88220696|gb|CI220256.1|CI220256
genomic: CCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: CTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|29687897|gb|CB684172.1|CB684172
genomic: CTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|29630419|gb|CB635428.1|CB635428
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|86827098|gb|CI270817.1|CI270817
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTAGEST: gi|33800967|gb|CF326357.1|CF326357
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|86436764|gb|CI118486.1|CI118486
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|29625158|gb|CB630169.1|CB630169
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|29630417|gb|CB635426.1|CB635426
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGEST: gi|427516|gb|D23583.1|D23583
genomic: TGTCCGTGCTAATCCTACAGTTTTGGAAGGCCTTGGAGCATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
EST: ATATTTAGAAG AGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
genomic: ATATTTAGAAGgtaaaaaact ... ccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTG
aaaaatgaaaactgtttaacctatgcataacggctttcttctctaccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGTTGCACCAAAAGAATTGACCTCATTTATAAGAGGAAAGCAAGAGCAGGT
gcataac putative branch site (score: 26)
ctttcttctctacccc putative PPT
tgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaactagaccaaattatcaggttgcatatgttattgtggctctcctttctatgatgggttttgcttcattagattaaaaatgaaaactgtttaacctatgcataacggctttcttctctaccccattcagAGAATGAAAAGGTTGAGGGCGAGGAGCTTCAAGAGTGGCTCAAGTCGGTTGTTGCACCAAAAGAATTGACCTCATTTATAAGAGGAAAGCAAGAGCAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG