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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgtttaagaaacaagttaataaactctggaggctgtctgataagttcctattcattttgtctactgttcctgataagctaccctccctttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA

Basic information

species Oryza sativa
transcript LOC_Os02g41590.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 9
---gatgtttaagaaacaagttaataaactctggaggctgtctgataagttcctattcattttgtctactgttcctgataagctaccctccctttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA
   |    ||||     |        | ||   |    ||    | |   | || | |||||| | | ||| ||||||||| | | ||  |  |   |  |||||||||| || |||||||||||||||||||| ||||||| |   ||| ||||||| ||||  |||| ||| ||||||||||||||||| |||||||||||
actgcaacttaaatttaagaacggccagctactggatttgaacta-agacttctttacattttattttctggtcctgataatcaatccatc--tcgcttctagGTGATGCTTTCGTTGGAGGCTTCCTCTCACAGTTGGTTCTAGGCAAGGGCATTGAAGACTGCGTGAGGGCAGGTTGCTATGCCGCAAACGTTATCATCCA

upper sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 12
-------------------------------------------------------------------------------------gatgtttaagaaacaa-gttaataaactctggag-gctgtctga----taagttcctattcattttgtct-actgttcctgataa------gctaccctccctt--tattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA
                                                                                     ||||| |   | | || |||||  |    |   |   |   |||    | |    || | | | || | |  |||||||||||||       | |  || ||||  |  || ||||||| || || || |||||||| ||||| |   |||| ||    |||||||| |||||||  |||| |||||||||||| ||||| |||||| |||||||
gtacatgtttctttagtgataagagttagtttatctatttccgatatttttttcattctcaaacgctagttggtttgttcgctaagatgtcttccatataatgttaactactattattgcattacatgaaagctgaacgtctctacgtcttattttgctgttcctgataacacccaaccaatcttccttgctcctcctagGTGACGCTTTCGTCGGAGGCTTTCTCTCTCGGCTGGTCCAGGGCAAGAGCATCGAGGACTGCGTGACGGCTGGTTGCTACGCCGCCAATGTTGTCATCCA

upper sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 11
-gatgttta---agaaacaagttaataaactctggaggctgtctgataagttcctattcattttgtctactgttcctgataagctaccctccctttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA
 |  |   |   || |     | |||| ||  |||  | || |    ||| | ||  | ||||||| |  |||| |  ||    ||   |   | | ||  |||| ||||| ||||||||||| || || || |||||||||||  | |||  |||||| || | |||||  ||||| || ||||| |||||||||||||||||
tggggcacagccaggatttcataaatagacggtggtag-tgacaagcaagatgctgctgattttgtttcatgtttc--atcccttattgttt-tgtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88465830|gb|CI524780.1|CI524780
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86834375|gb|CI341284.1|CI341284
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|38482919|gb|CF966721.1|CF966721
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAACGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88216132|gb|CI215981.1|CI215981
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33653981|gb|CF276595.1|CF276595
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGTCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33690915|gb|CF319154.1|CF319154
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|87006970|gb|CI275278.1|CI275278
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|27578125|gb|CB000820.1|CB000820
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|89167316|gb|CI252847.1|CI252847
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|24468820|gb|CA305769.1|CA305769
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAACGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88980836|gb|CI022526.1|CI022526
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86420865|gb|CI056854.1|CI056854
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|87026580|gb|CI252534.1|CI252534
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88725620|gb|CI748879.1|CI748879
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCACCAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|58600653|gb|CK011181.1|CK011181
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAACGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|300215864|gb|HO088490.1|HO088490
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88983145|gb|CI020709.1|CI020709
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86494084|gb|CI136717.1|CI136717
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86834377|gb|CI341286.1|CI341286
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86427447|gb|CI072544.1|CI072544
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|58600340|gb|CK010868.1|CK010868
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAACGGCGCTG                         GGGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88264879|gb|CI367530.1|CI367530
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATAGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86511587|gb|CI154220.1|CI154220
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88241191|gb|CI241040.1|CI241040
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88206348|gb|CI206197.1|CI206197
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88995532|gb|CI022855.1|CI022855
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|9866041|gb|AU101791.1|AU101791
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|55408547|gb|CV720923.1|CV720923
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33800932|gb|CF326339.1|CF326339
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88518438|gb|CI446092.1|CI446092
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88262425|gb|CI366199.1|CI366199
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88451562|gb|CI539353.1|CI539353
EST:     CTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33812141|gb|CF331960.1|CF331960
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88442170|gb|CI560411.1|CI560411
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88847409|gb|CI015902.1|CI015902
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88993161|gb|CI108789.1|CI108789
EST:     CCTGTGATCCTACTGCCAAAGGAGAAGCTTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCTGTGATCCTACTGCCAAAGGAGAAGC-TTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|89199046|gb|CI253120.1|CI253120
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|30227286|gb|CB965178.1|CB965178
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88291255|gb|CI527645.1|CI527645
EST:     TTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: TTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88241275|gb|CI241124.1|CI241124
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88974437|gb|CI021978.1|CI021978
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88852687|gb|CI008880.1|CI008880
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|89175912|gb|CI042933.1|CI042933
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86253196|gb|CI058121.1|CI058121
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88966149|gb|CI013025.1|CI013025
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|89176982|gb|CI111182.1|CI111182
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88466161|gb|CI527360.1|CI527360
EST:     CTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86417957|gb|CI032166.1|CI032166
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88845212|gb|CI084137.1|CI084137
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88241201|gb|CI241050.1|CI241050
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33681208|gb|CF309447.1|CF309447
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88258247|gb|CI360833.1|CI360833
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86506822|gb|CI149455.1|CI149455
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|66922324|gb|CX109172.1|CX109172
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33805852|gb|CF328805.1|CF328805
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86601408|gb|CI253736.1|CI253736
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86538179|gb|CI178385.1|CI178385
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88844873|gb|CI022227.1|CI022227
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86491265|gb|CI133898.1|CI133898
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88844636|gb|CI021211.1|CI021211
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33682685|gb|CF310924.1|CF310924
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88992803|gb|CI035765.1|CI035765
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86428609|gb|CI075290.1|CI075290
EST:     CCCTGTGATCCTACTGCCAAAGGTGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33820776|gb|CF336193.1|CF336193
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86523181|gb|CI163387.1|CI163387
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|89168834|gb|CI020915.1|CI020915
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|38473896|gb|CF958028.1|CF958028
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAACGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33681078|gb|CF309317.1|CF309317
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88241182|gb|CI241031.1|CI241031
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88201675|gb|CI202030.1|CI202030
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88200328|gb|CI200178.1|CI200178
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGTCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86873826|gb|CI341259.1|CI341259
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33818911|gb|CF335280.1|CF335280
EST:     CNCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: C-CTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88220619|gb|CI220179.1|CI220179
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88225942|gb|CI225858.1|CI225858
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|33654124|gb|CF276738.1|CF276738
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88273681|gb|CI394087.1|CI394087
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86838635|gb|CI329129.1|CI329129
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86488463|gb|CI131096.1|CI131096
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88904132|gb|CI006365.1|CI006365
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88974187|gb|CI002806.1|CI002806
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|88969274|gb|CI382823.1|CI382823
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|86427222|gb|CI072319.1|CI072319
EST:     CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
EST: gi|186892736|gb|FG124637.1|FG124637
EST:     GGAGAAGCTTGTTGGCACCAATGGCGCTG                         GTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA
genomic: GGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 74 (downstream exon)
Score: 82

GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTGgtaatatttc ... ttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcctattcattttgtctactgttcctgataagctaccctccctttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA
                        tcctgat  putative branch site (score: 82)
                                  ctaccctccctttatt  putative PPT
     tattcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatgtttaagaaacaagttaataaactctggaggctgtctgataagttcctattcattttgtctactgttcctgataagctaccctccctttattcttagGTGATGCCTTTGTTGGAGGCTTCCTCTCACAATTGGTTCAACAAAAGAGCATTGAGGACTCTGTGAAGGCTGGTTGCTATGCCGCAAATGTTATCATCCA

- - - - agaaaca
- - - - - - - - - -aataaac
- - - - - - - - - - - - - - - - - ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccct