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gtactttgtaggtgccatttgttaaatttagtcttctgataactcgcagaacctgtgccatttgctcaaggacttgagaagatggaaatagcttaactaatacacactgaatctggtcaacataatgcaaaatcttcattgccatactttcttaattatggtttatgatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGATTTCTGGAGCTTTGACAGATCAGGAAGTACGCAGCGCACGTATAGAAG
species | Oryza sativa |
transcript | LOC_Os02g32570.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAG GGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGEST: gi|89178965|gb|CI043470.1|CI043470
genomic: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGgtactttgta ... gatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
EST: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAG GGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGEST: gi|88837636|gb|CI078996.1|CI078996
genomic: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGgtactttgta ... gatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
EST: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTTATCGTCAAG GGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGEST: gi|86479033|gb|CI121666.1|CI121666
genomic: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGgtactttgta ... gatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
EST: ATCGAATTGGTCAAACGAAGAGTGTTTCCATCAAAAGATTCATCGTCAAG GGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGEST: gi|89180507|gb|CI044786.1|CI044786
genomic: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGgtactttgta ... gatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
EST: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAG GGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
genomic: ATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGgtactttgta ... gatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATG
ataatgcaaaatcttcattgccatactttcttaattatggtttatgatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGATTTCTGGAGCTTTGACAGATCAGGAAGTACGCAGCGCACGTATAGAAG
tcttaat putative branch site (score: 3)
atactttcttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgtaggtgccatttgttaaatttagtcttctgataactcgcagaacctgtgccatttgctcaaggacttgagaagatggaaatagcttaactaatacacactgaatctggtcaacataatgcaaaatcttcattgccatactttcttaattatggtttatgatgacacagGGCACTGTCGAGGAACGAATGGAGGCTGTGCAGGCTCGTAAGCAGCGAATGATTTCTGGAGCTTTGACAGATCAGGAAGTACGCAGCGCACGTATAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA