1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaccacttctattcttgaactacacaaggagaaaacatgctgacatccttttctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG
species | Oryza sativa |
transcript | LOC_Os02g32350.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|2311450|gb|C27605.1|C27605
genomic: AGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: AAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCA-CNAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|29622581|gb|CB627592.1|CB627592
genomic: AAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGC-AGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|29674464|gb|CB670739.1|CB670739
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|218498571|gb|FG951792.1|FG951792
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: AGCAGCAGAGACTCAAG ATCTGGGAGAATTATGTAGA-GGTCGAAGAAGTTTCCAATGGATCTGCATCEST: gi|29623578|gb|CB628589.1|CB628589
genomic: AGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGT-GAAGAAGTTTCCAATGGATCTGCATC
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|66916134|gb|CX102982.1|CX102982
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|88329612|gb|CI650071.1|CI650071
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|13420819|gb|AU174909.1|AU174909
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|29627293|gb|CB632304.1|CB632304
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|29631512|gb|CB636521.1|CB636521
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|38565897|gb|CK085350.1|CK085350
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|218500523|gb|FG958817.1|FG958817
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|29644259|gb|CB649266.1|CB649266
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTEST: gi|58692787|gb|CK081474.1|CK081474
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
EST: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAG ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
genomic: CAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGgtaaccactt ... ctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCT
tctattcttgaactacacaaggagaaaacatgctgacatccttttctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG
tgctgac putative branch site (score: 2)
catccttttctttttc CT-rich tract
ttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccacttctattcttgaactacacaaggagaaaacatgctgacatccttttctttttcaagATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA