1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgtgtttaaatgcgaaagttcagttcagattgagtgtaccttttcttctttttgacagggaagtgatttattgctgatatcacatacttgaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAAGCACACCAAGGTCTAGCTTTTCGTCCAGGACCAACAATGAAAGTGAAT
species | Oryza sativa |
transcript | LOC_Os02g20970.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAG GTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAEST: gi|88262956|gb|CI366730.1|CI366730
genomic: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAGgtgagaggag ... gaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCA
EST: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAG GTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAEST: gi|58673965|gb|CK062651.1|CK062651
genomic: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAGgtgagaggag ... gaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCA
EST: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGTAAATGAAAAG GTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAEST: gi|218494211|gb|FG946896.1|FG946896
genomic: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAGgtgagaggag ... gaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCA
EST: CA-GGCGGA-TCATATAGCAGT-ACAGTACTTGAAGATGTAAATGAAAAG GTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCA
genomic: CAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAGgtgagaggag ... gaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCA
cttctttttgacagggaagtgatttattgctgatatcacatacttgaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAAGCACACCAAGGTCTAGCTTTTCGTCCAGGACCAACAATGAAAGTGAAT
tgctgat putative branch site (score: 3)
tgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgtttaaatgcgaaagttcagttcagattgagtgtaccttttcttctttttgacagggaagtgatttattgctgatatcacatacttgaacttgcagGTTCCAAACGATGACGATGAGCAGTGTGGAACACCCAAGGGGGGTAAAGCAAGCACACCAAGGTCTAGCTTTTCGTCCAGGACCAACAATGAAAGTGAAT
-tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatac