1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...taaaattcctttcaattttttaatatggtgtgagagcgtatggtattttgttttggtgatctgttttatttgctagtttcttactgctgcacgtgcacagGTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAA
species | Oryza sativa |
transcript | LOC_Os02g20930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAG GTTAAC-G-AACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAEST: gi|58657534|gb|CK046214.1|CK046214
genomic: GATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGgtaggttgca ... acgtgcacagGTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCA
EST: GATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAG GTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTGA
genomic: GATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGgtaggttgca ... acgtgcacagGTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCA
ttttgttttggtgatctgttttatttgctagtttcttactgctgcacgtgcacagGTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAA
ttcttac putative branch site (score: 47)
tgttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaattcctttcaattttttaatatggtgtgagagcgtatggtattttgttttggtgatctgttttatttgctagtttcttactgctgcacgtgcacagGTTAACTGGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg