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...ttgtgctccgccttcatatcattttccacttcgaatgctattccaaatcatccatggatcactgagcttaaacacttctgttttacatgaaattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|29680675|gb|CB676950.1|CB676950
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACGTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTGGTCGATGCTCAATGGATTGTTCATCAAEST: gi|29616239|gb|CB621251.1|CB621251
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|29641724|gb|CB646731.1|CB646731
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|29641418|gb|CB646425.1|CB646425
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|58695050|gb|CK083737.1|CK083737
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|58596057|gb|CK006585.1|CK006585
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|29676039|gb|CB672314.1|CB672314
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|38475807|gb|CF959940.1|CF959940
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|33795503|gb|CF323621.1|CF323621
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|38478883|gb|CF963016.1|CF963016
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: TCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|86892855|gb|CI312142.1|CI312142
genomic: TCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: GGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTTCATCEST: gi|58685144|gb|CK073831.1|CK073831
genomic: GGATGGGGTCTTGATTTCGCTCTAAGGAAATGT-GTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTG-TTCATC
EST: GTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAAEST: gi|27577797|gb|CB000492.1|CB000492
genomic: GTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAEST: gi|58603030|gb|CK013558.1|CK013558
genomic: ACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
EST: ATTTCGCTCTAAGGAAATGTGTGGAG CCTGCTCATGAGAAGATTGGAGTCGTTGATGCTCAATGGATTGTTCATCAA
genomic: ATTTCGCTCTAAGGAAATGTGTGGAGgtactctttg ... aattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAA
aatcatccatggatcactgagcttaaacacttctgttttacatgaaattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG
ttttacatgaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgctccgccttcatatcattttccacttcgaatgctattccaaatcatccatggatcactgagcttaaacacttctgttttacatgaaattaatcagCCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- gtgctcc
- - - - -gccttca
- - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - -atccatg