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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcagATGGGACCTGAAAAGGCAACTGAGAAGGAATGGGGAGTCAATTATAGGGCATTAAATGACCTTTTCAATATTTCTCATGACCGTAGAGACACAATCACTT

Basic information

species Oryza sativa
transcript LOC_Os02g13580.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13580.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G062034_T01 (Zea mays), 3'ss of exon 5
gtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtc-actatgtgtttacaacgatctgtttctatcaatttctcagATGGGACCTGAAAAGGCAACTGAGAAGGAATGGGGAGTCAATTATAGGGCATTAAATGACCTTTTCAATATTTCTCATGACCGTAGAGACACAATCACTT
          |      || |  | |   |   | ||| ||| | | ||  |      ||||| || |||  |  |  || | |||||||  |  |||||| || |||| |||||||||| || ||||| ||||||||||| |||||||| ||||| ||| | ||| |||||||||||||||| || || ||||| ||| | |||||||| |  |
----------gtatgaagctatcagaaccgaaatatttttttaaatatgttt------agattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcagATGGGTCCGGAAAACGCAACTGAGAAAGAATGGGGTGTCAACTATCGAGCACTAAATGACCTTTTCAACATCTCACATGATCGTCGGGACACAATTAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcagATGGGACCTGAAAAGGCAACTGAGAAGGAATGGGGAGTCAATTATAGGGCATTAAATGACCTTTTCAATATTTCTCATGACCGTAGAGACACAATCACTT
                                               tttctc  CT-rich tract
                                         tatcaattt  TA-rich tract