1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagatatcctttctgaaatcacttccatcatgtgtagtgtgtcctttttctgttgctcagggattgaagcttacctgaaaagtgagaaattgcagGTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACTGGGGATCTGAGATCATACAAAGAG
species | Oryza sativa |
transcript | LOC_Os02g08140.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAAATTACTACCAAGAAGCAATCTTGATCTTACTCTGTCGGCCGAG GTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACTEST: gi|33801767|gb|CF326756.1|CF326756
genomic: ACAGCAAATTACTACCAAGAAGCAATCTTGATCTTACTCTGTCGGCCGAGgtgagatatc ... gaaattgcagGTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACT
EST: ACAGCAAATTACTACCAAGAAGCAATCTTGATCTTACTCTGTCGGCCGAG GTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACT
genomic: ACAGCAAATTACTACCAAGAAGCAATCTTGATCTTACTCTGTCGGCCGAGgtgagatatc ... gaaattgcagGTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACT
gtcctttttctgttgctcagggattgaagcttacctgaaaagtgagaaattgcagGTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACTGGGGATCTGAGATCATACAAAGAG
agcttac putative branch site (score: 3)
agaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatatcctttctgaaatcacttccatcatgtgtagtgtgtcctttttctgttgctcagggattgaagcttacctgaaaagtgagaaattgcagGTGATCAAGGTAACACCAGCTCACTGCGTCGTCGAGGTGTCCAAATCAACTGGGGATCTGAGATCATACAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA