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gttcaaactttaagacattttggattcattcatttactgccttatacattttattgagttaaaccccactctgttcagGCTGGCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTG
species | Oryza sativa |
transcript | LOC_Os01g72650.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATCATCCTGGGCAG GNTGGCAATGAAGCTTGCCCNATTTCATGGAATTCCTGCCAATCCCAAACCEST: gi|58683076|gb|CK071763.1|CK071763
genomic: GATCATCCTGGGCAGgttcaaactt ... ctctgttcagGCTGGCAATGAAGCTTGCCC-ATTTCATGGAATTCCTGCCAATCCCAAACC
EST: GTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAG GCTGGCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCT
genomic: GTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAGgttcaaactt ... ctctgttcagGCTGGCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCT
attcattcatttactgccttatacattttattgagttaaaccccactctgttcagGCTGGCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTG
ccccactct CT-rich tract
ttatacattttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaactttaagacattttggattcattcatttactgccttatacattttattgagttaaaccccactctgttcagGCTGGCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT