1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaaaacatcgccaaaaagaggaaacagatcggataattttcaggcaaatgctttgcagtttgctctgaaattcttcagacattttgatcaggaagaactcctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGAC
species | Oryza sativa |
transcript | LOC_Os01g70520.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|29619010|gb|CB624022.1|CB624022
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|88845009|gb|CI022363.1|CI022363
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|117232559|gb|CT861000.1|CT861000
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|86893267|gb|CI313402.1|CI313402
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGAGTATCCTGACTGCACTAA- GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|88217036|gb|CI216740.1|CI216740
genomic: AGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: ACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|86890286|gb|CI321463.1|CI321463
genomic: ACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCCCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|86539377|gb|CI179583.1|CI179583
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: TACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|86490085|gb|CI132718.1|CI132718
genomic: TACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: ACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|88991083|gb|CI108470.1|CI108470
genomic: ACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|89198013|gb|CI117491.1|CI117491
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|29612789|gb|CB617802.1|CB617802
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTEST: gi|29620624|gb|CB625635.1|CB625635
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGCGTTEST: gi|86890264|gb|CI321441.1|CI321441
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
EST: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTC-TGTACGTGTT
genomic: AGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGgtgaaaacat ... ctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTT
cagtttgctctgaaattcttcagacattttgatcaggaagaactcctctctgcagGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGAC
ttttgat putative branch site (score: 22)
ctcctctctgc putative PPT
aaattctt TA-rich tract