1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gtttctttcatgattacttgtaacctacgtgcctaatttttttctcattacttttcattgcattgattgccattctctggtgtcattacttatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCAAACGTATTCTAAG
species | Oryza sativa |
transcript | LOC_Os01g69060.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCEST: gi|29639813|gb|CB644822.1|CB644822
genomic: AAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
EST: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCEST: gi|88848470|gb|CI086992.1|CI086992
genomic: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
EST: CAGTGCAAATTACAAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCEST: gi|66923779|gb|CX110627.1|CX110627
genomic: CAGTGCAAATTACAAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
EST: TTGAAGATTTTTGTGGCAGTGAAAATTACAAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAAGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCEST: gi|86849508|gb|CI299701.1|CI299701
genomic: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
EST: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCEST: gi|86523000|gb|CI163206.1|CI163206
genomic: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
EST: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATG GCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
genomic: TTGAAGATTTTTGTGGCAGTGCAAATTACAAAATTTTAGAACTGCCAATGgtttgttgtc ... tatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTC
cattacttttcattgcattgattgccattctctggtgtcattacttatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCAAACGTATTCTAAG
cattgat putative branch site (score: 4)
attacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttcatgattacttgtaacctacgtgcctaatttttttctcattacttttcattgcattgattgccattctctggtgtcattacttatcatgcagGCAGGGCACCATGTGCAGGAGGACCGTGGTGAAGAGCTAGGCAAGCTAGTCAAACGTATTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - -tttcatg
- - - - - - - - - - - - - - gtgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtgt