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gtgcttcttggtcacacattcttttattctggacactctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgttgctgcgtatcacgctctgttctaatggcatttcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAACCGTTACTGCTGATCCAGATGCACGTGACTACTCAACTTCTCACCTCA
species | Oryza sativa |
transcript | LOC_Os01g64770.5 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|33678526|gb|CF306765.1|CF306765
genomic: AGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|29674457|gb|CB670732.1|CB670732
genomic: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TCCAGATGGTTGACGGGCTTCAGGGTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAATTACTCCAAGTACCCAEST: gi|218479207|gb|FG957479.1|FG957479
genomic: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|88974537|gb|CI022078.1|CI022078
genomic: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: GGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|4714598|gb|AU055715.1|AU055715
genomic: GGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: CCAGATGGCTGACCGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATNCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|29656749|gb|CB653024.1|CB653024
genomic: CCAGATGGCTGA-CGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|29687502|gb|CB683777.1|CB683777
genomic: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAEST: gi|58608817|gb|CK036850.1|CK036850
genomic: TCCAGATGGCTGACGGGCTTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
EST: TTCAGGCTGAGCTTGCTGTACTGTATTTAAAG GGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
genomic: TTCAGGCTGAGCTTGCTGTACTGTATTTAAAGgtgcttcttg ... tcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCA
tgtgtgtggatgttgctgcgtatcacgctctgttctaatggcatttcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAACCGTTACTGCTGATCCAGATGCACGTGACTACTCAACTTCTCACCTCA
ttctaat putative branch site (score: 2)
tttcctatcc putative PPT
ttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttcttggtcacacattcttttattctggacactctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgttgctgcgtatcacgctctgttctaatggcatttcctatccagGGAGCAATGCTATTCGGAAAGAAGCTTGAAGTGAACTACTCCAAGTACCCAACCGTTACTGCTGATCCAGATGCACGTGACTACTCAACTTCTCACCTCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG