1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...catatagtgagtaatattaagataatctagatttgtaatccttacacaaatatttgattgtaattttgaattaaaatgtggacctccttgttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCTGGGAGTGAACTGTCACAGCACATCAGTACCGCAGGCATGGAAGCAAGTG
species | Oryza sativa |
transcript | LOC_Os01g63270.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAG GTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCTEST: gi|27577680|gb|CB000375.1|CB000375
genomic: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAGgtatggaact ... ttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCT
EST: TGTTGGTGCTGTGGTGAACAATGATCCTGACT-TTAATAAATACCTAAAG GTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCTEST: gi|29623807|gb|CB628818.1|CB628818
genomic: TGTTGGTGCTGTGGTGAACAATGATCCTGA-TGTTAATAAATACCTAAAGgtatggaact ... ttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCT
EST: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAG GTGGTGTTCATTCCCA-CTACA-TGTATCTEST: gi|29623647|gb|CB628658.1|CB628658
genomic: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAGgtatggaact ... ttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCT
EST: TGTTGGTGCTGTGGTGAAACA-TGATCCTGATGTTAATAA-TACCTAAAG GTGGTGTTCATTCCCA-CTACAATGTATCTEST: gi|218500897|gb|FG952814.1|FG952814
genomic: TGTTGGTGCTGTGGTGAA-CAATGATCCTGATGTTAATAAATACCTAAAGgtatggaact ... ttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCT
EST: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAG GTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCT
genomic: ATGTTGGTGCTGTGGTGAACAATGATCCTGATGTTAATAAATACCTAAAGgtatggaact ... ttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCT
acaaatatttgattgtaattttgaattaaaatgtggacctccttgttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCTGGGAGTGAACTGTCACAGCACATCAGTACCGCAGGCATGGAAGCAAGTG
atttgat putative branch site (score: 5)
cctccttgttcctctc putative PPT
tatttgattgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatagtgagtaatattaagataatctagatttgtaatccttacacaaatatttgattgtaattttgaattaaaatgtggacctccttgttcctctcagGTGGTGTTCATTCCCAACTACAATGTATCTGTGGCCGAGGTGCTCATTCCTGGGAGTGAACTGTCACAGCACATCAGTACCGCAGGCATGGAAGCAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG