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gtatgtatacaaggtcttcgttatagtttcatgatttattataatctaagataagatggtttacatctaggcttaggttgctgctgagtttcatctgaagttctttcaaattatcaatcacttgcatgtacttgttacttcttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGT
species | Oryza sativa |
transcript | LOC_Os01g62080.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|86419537|gb|CI054338.1|CI054338
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCCAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|88278121|gb|CI399121.1|CI399121
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: GTCCCCTTCCCAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|109712124|gb|CI104732.1|CI104732
genomic: GTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|88268204|gb|CI378139.1|CI378139
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|88278123|gb|CI399123.1|CI399123
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|88902914|gb|CI088452.1|CI088452
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|86434684|gb|CI105917.1|CI105917
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|27576166|gb|CA998860.1|CA998860
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|86484027|gb|CI126660.1|CI126660
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAEST: gi|86598138|gb|CI278528.1|CI278528
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
EST: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGA TCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
genomic: ATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAgtatgtatac ... ttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGA
gaagttctttcaaattatcaatcacttgcatgtacttgttacttcttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGT
cttgttacttcttttt CT-rich tract
tttcaaattatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatacaaggtcttcgttatagtttcatgatttattataatctaagataagatggtttacatctaggcttaggttgctgctgagtttcatctgaagttctttcaaattatcaatcacttgcatgtacttgttacttcttttttacagTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG