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gtgatatttcctttctttccattgactcaacagtctttaattttttgaactatgaagtacctgagttctctgctcactgtctcgaattattttttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATGAGGTGGAGAATGTTTATCATTGGGCTTGTGG
species | Oryza sativa |
transcript | LOC_Os01g40340.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|29612947|gb|CB617960.1|CB617960
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|29680806|gb|CB677081.1|CB677081
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|24208348|gb|AU225375.1|AU225375
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|88717309|gb|CI740819.1|CI740819
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|58679221|gb|CK067908.1|CK067908
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|29680847|gb|CB677122.1|CB677122
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATEST: gi|58689270|gb|CK077957.1|CK077957
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
actatgaagtacctgagttctctgctcactgtctcgaattattttttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATGAGGTGGAGAATGTTTATCATTGGGCTTGTGG
ttttaac putative branch site (score: 30)
ttatttttt CT-rich tract
tcgaattattttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatttcctttctttccattgactcaacagtctttaattttttgaactatgaagtacctgagttctctgctcactgtctcgaattattttttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAATGAGGTGGAGAATGTTTATCATTGGGCTTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA