1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aaagcttgattgattcttcttgatactgtccgctcagagttttgttctacctctttcgtttgaaaacaagttgtaatattctttcttcttttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAG
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29615419|gb|CB620431.1|CB620431
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29646292|gb|CB651299.1|CB651299
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29674106|gb|CB670381.1|CB670381
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29679501|gb|CB675776.1|CB675776
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|58686515|gb|CK075202.1|CK075202
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: AGGCAAAGATTTTACGG AAAGTTGATATACCCGCTGGAACTGGGATGTTTATGACTTTTGCTCAGATGEST: gi|29667425|gb|CB663700.1|CB663700
genomic: AGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGAT-TACCCGCTGGAACT-GGATGTTTATGACTTTTGCTCAGATG
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|66916241|gb|CX103089.1|CX103089
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|58676643|gb|CK065330.1|CK065330
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29615344|gb|CB620356.1|CB620356
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: AAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAAEST: gi|29689096|gb|CB685371.1|CB685371
genomic: AAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
EST: TTCGTTTCTTTGGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG AAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTNTTGCTCAGATGAA
genomic: TTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttat ... ttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAA
tctacctctttcgtttgaaaacaagttgtaatattctttcttcttttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAG
tattctttcttctttt CT-rich tract
ttgtaatattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcttgattgattcttcttgatactgtccgctcagagttttgttctacctctttcgtttgaaaacaagttgtaatattctttcttcttttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - tgattct
- - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa