1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGAGACAGCTTCCGCACGAC
species | Oryza sativa |
transcript | LOC_Os01g14860.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCGAATGGCCGCTTTTGGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88837429|gb|CI078789.1|CI078789
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|109712442|gb|CI105050.1|CI105050
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58686738|gb|CK075425.1|CK075425
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88691118|gb|CI735197.1|CI735197
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88830876|gb|CI079310.1|CI079310
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|86430181|gb|CI082604.1|CI082604
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACATCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88840706|gb|CI080160.1|CI080160
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58590369|gb|CF988677.1|CF988677
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|86538741|gb|CI178947.1|CI178947
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88997238|gb|CI389904.1|CI389904
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|89169640|gb|CI109999.1|CI109999
genomic: CCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: AACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|218498670|gb|FG952679.1|FG952679
genomic: AACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58601780|gb|CK012308.1|CK012308
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGGCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|29618977|gb|CB623989.1|CB623989
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58602991|gb|CK013519.1|CK013519
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAEST: gi|58689596|gb|CK078283.1|CK078283
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGA
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTGGTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|86435919|gb|CI107152.1|CI107152
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58672614|gb|CK061300.1|CK061300
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88996910|gb|CI389576.1|CI389576
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|89188311|gb|CI115560.1|CI115560
genomic: CCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88249043|gb|CI248892.1|CI248892
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|5003278|gb|AU068427.1|AU068427
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|218501699|gb|FG952639.1|FG952639
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|16753402|gb|BM037767.1|BM037767
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: TCAACTTCAAG-CTCATG AACTTGAAAGGAATCCCATCAGATATTAT-GCGAAATGGATCCCAGAACATEST: gi|109712624|gb|CI105232.1|CI105232
genomic: TCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAAC-TGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACAT
EST: CCGCTTTTTGCCTCCTCTCTTGAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58676941|gb|CK065628.1|CK065628
genomic: CCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTCTCTTCAATTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|38470230|gb|CF954361.1|CF954361
genomic: CCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|86593838|gb|CI260067.1|CI260067
genomic: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|86834649|gb|CI340766.1|CI340766
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88271763|gb|CI387816.1|CI387816
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|55411037|gb|CV723413.1|CV723413
genomic: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88834039|gb|CI077520.1|CI077520
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|29677191|gb|CB673466.1|CB673466
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88268674|gb|CI378609.1|CI378609
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88960574|gb|CI006535.1|CI006535
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|3763206|gb|AU029958.1|AU029958
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: GGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88220028|gb|CI219588.1|CI219588
genomic: GGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|218501528|gb|FG953636.1|FG953636
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|87038213|gb|CI192835.1|CI192835
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCGGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88994735|gb|CI036316.1|CI036316
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTGTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|87007029|gb|CI275337.1|CI275337
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|33691829|gb|CF320068.1|CF320068
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCTTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|88845974|gb|CI084704.1|CI084704
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|2317500|gb|C22554.1|C22554
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CCTTCCGAATGGCCGCTTTTTGCCTCTTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGEST: gi|58679590|gb|CK068277.1|CK068277
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: CTCCTCTCTTCAACTTCAAGCCTCATG AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
cataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGAGACAGCTTCCGCACGAC
tacttac putative branch site (score: 1)
cgttgcccctttcttg CT-rich tract
atatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGAGACAGCTTCCGCACGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA