1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttagttgaaagtctgctacctgttactttttttttgtcttgtgtccaatccttgagtgaatgaccgatttgccgattttggcatcttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
species | Oryza sativa |
transcript | LOC_Os01g07740.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|86858567|gb|CI273118.1|CI273118
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: CAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|86255617|gb|CI065294.1|CI065294
genomic: CAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: GCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|88967992|gb|CI098234.1|CI098234
genomic: GCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|86437349|gb|CI119071.1|CI119071
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|86437630|gb|CI119352.1|CI119352
genomic: AAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|29681553|gb|CB677828.1|CB677828
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|66913147|gb|CX099995.1|CX099995
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|86481884|gb|CI124517.1|CI124517
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: CAATCAAACCAGTGACAATCCAAGCTTTCATG-C-- CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|163920524|gb|EG709580.1|EG709580
genomic: CAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|87016372|gb|CI271783.1|CI271783
genomic: AACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: GCAGCGGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|88252469|gb|CI350897.1|CI350897
genomic: GCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: CTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGEST: gi|88903064|gb|CI088602.1|CI088602
genomic: CTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
EST: ACAATCCAAGCTTTCATGCCAG CAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
genomic: ACAATCCAAGCTTTCATGCCAGgttagttgaa ... cttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
tgtgtccaatccttgagtgaatgaccgatttgccgattttggcatcttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
atcttataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttgaaagtctgctacctgttactttttttttgtcttgtgtccaatccttgagtgaatgaccgatttgccgattttggcatcttataatagCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT