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gtaagtggtttgtcatacgctttagtcaggccttttgctgattgtcattgttaactgttaatataacttgaatataattttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCT
species | Oryza sativa |
transcript | LOC_Os01g04190.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTT GT--GTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTEST: gi|38481055|gb|CF965144.1|CF965144
genomic: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtt ... ttttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
EST: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTT GTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTEST: gi|58598313|gb|CK008841.1|CK008841
genomic: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtt ... ttttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
EST: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTT GTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTEST: gi|27554385|gb|CA998285.1|CA998285
genomic: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtt ... ttttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
EST: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTT GTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTEST: gi|27576947|gb|CA999641.1|CA999641
genomic: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtt ... ttttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
EST: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTT GTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
genomic: AAGGCTTTGGCACCTTATTCAGGCCCTCTTGCTGTTGCTGGCACTGTTTTgtaagtggtt ... ttttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCT
ttttgctgattgtcattgttaactgttaatataacttgaatataattttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCT
ttttattt CT-rich tract
attgttaactgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtttgtcatacgctttagtcaggccttttgctgattgtcattgttaactgttaatataacttgaatataattttatttagGTATGTGCTGTCTTTTGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT