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gtggtgtcaaaatagtcacagacacccaaaacaatattaattccaattaaaactaaatcagcaatgttgaatggcatactaatgcagcaattccctgatcctgacaaattttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCACATCTGACGTGGTGATTGTTGAGGCGAAAGAAGGCAAACCAGTTCGCA
species | Oryza sativa |
transcript | 13113.m00214 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAATGGCCGCTGGAATATTAGATCCATCAAAG GTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCEST: gi|58687450|gb|CK076137.1|CK076137
genomic: TAATGGCCGCTGGAATATTAGATCCATCAAAGgtggtgtcaa ... attttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTC
EST: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAG GTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCEST: gi|33681193|gb|CF309432.1|CF309432
genomic: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAGgtggtgtcaa ... attttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTC
EST: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAG GTTGTGAGATGTTGCATAGAACATGGCTGCTGTGGTCGCCAAGTCTTTTCTEST: gi|33681075|gb|CF309314.1|CF309314
genomic: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAGgtggtgtcaa ... attttactagGTTGTGAGATGTTGCATAGAACATG-CTGCTGTGGTCGCCAAGTCTTTTCT
EST: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAG GTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCEST: gi|58689718|gb|CK078405.1|CK078405
genomic: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAGgtggtgtcaa ... attttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTC
EST: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAG GTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTC
genomic: AGAACCGCTATGAGGACTTAATGGCCGCTGGAATATTAGATCCATCAAAGgtggtgtcaa ... attttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTC
aatgttgaatggcatactaatgcagcaattccctgatcctgacaaattttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCACATCTGACGTGGTGATTGTTGAGGCGAAAGAAGGCAAACCAGTTCGCA
ttttact CT-rich tract
aaattttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgtcaaaatagtcacagacacccaaaacaatattaattccaattaaaactaaatcagcaatgttgaatggcatactaatgcagcaattccctgatcctgacaaattttactagGTTGTGAGATGTTGCATAGAACATGCTGCTGTGGTCGCCAAGTCTTTTCTCACATCTGACGTGGTGATTGTTGAGGCGAAAGAAGGCAAACCAGTTCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG