1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtccgtgcctgttgttgatgatgcaatgctaattattcaggttgcgattgagctttctgttgaggctgacattttcacacttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTGGTATACAG
species | Oryza sativa |
transcript | LOC_Os12g42884.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTEST: gi|218478602|gb|FG965538.1|FG965538
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGT
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGAEST: gi|218486860|gb|FG950334.1|FG950334
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGA
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGAEST: gi|428194|gb|D24342.1|D24342
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGA
EST: CCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGAEST: gi|41884047|gb|BX928878.1|BX928878
genomic: CCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGA
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGGAGGTCGAGGEST: gi|396941330|gb|HO188539.1|HO188539
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGG-AGGTCGAGG
EST: TGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATC-AGAAAGGAGGTCGAGGEST: gi|218501245|gb|FG948195.1|FG948195
genomic: TGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAG-AAGGAGGTCGAGG
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGAEST: gi|58661898|gb|CK050578.1|CK050578
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGA
EST: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAG GTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAG
genomic: GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcct ... acttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAG
tattcaggttgcgattgagctttctgttgaggctgacattttcacacttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTGGTATACAG
ggctgac putative branch site (score: 3)
cttgctc putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtgcctgttgttgatgatgcaatgctaattattcaggttgcgattgagctttctgttgaggctgacattttcacacttgctcagGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTGGTATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG