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gtaggtcccagatgaactttaccatttttttctcgaaagcagatgaagtttaccattgctcttatagaattttcttgtcattttaaaaccacttctaagttctctttgcttttgatttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG
species | Oryza sativa |
transcript | LOC_Os12g40830.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGNGTAAT AAATACCCTGNTAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88527260|gb|CI455400.1|CI455400
genomic: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: TTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88266886|gb|CI368662.1|CI368662
genomic: TTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: TCACGGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|86885325|gb|CI317085.1|CI317085
genomic: TCACGGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|13165352|gb|AU174149.1|AU174149
genomic: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88540839|gb|CI468912.1|CI468912
genomic: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: CGGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|89185094|gb|CI049640.1|CI049640
genomic: CGGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88227203|gb|CI228316.1|CI228316
genomic: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: CCTTCTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88473155|gb|CI410426.1|CI410426
genomic: CCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: GGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGEST: gi|88543303|gb|CI473300.1|CI473300
genomic: GGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
EST: GGCACTGGAGATTTAACAACTGCCCTTTTACTAGGATGGAGTAAT AAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
genomic: GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATgtaggtccca ... atttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTG
ttttcttgtcattttaaaaccacttctaagttctctttgcttttgatttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG
ttttgat putative branch site (score: 20)
ttgtcattttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcccagatgaactttaccatttttttctcgaaagcagatgaagtttaccattgctcttatagaattttcttgtcattttaaaaccacttctaagttctctttgcttttgatttgtacagAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG