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...ttatttttgactgtttcttccatacagggtacagattcctcctaattcccttagttattcttaagcagtttgcacataattctggcatcttcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAG
species | Oryza sativa |
transcript | LOC_Os12g29990.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|89198378|gb|CI007438.1|CI007438
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: CCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29684472|gb|CB680747.1|CB680747
genomic: CCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGTTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29616288|gb|CB621300.1|CB621300
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29637789|gb|CB642798.1|CB642798
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|87009957|gb|CI277458.1|CI277458
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|38481194|gb|CF965283.1|CF965283
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGGCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGGACTGACAATG GTGTCATGATTEST: gi|29641596|gb|CB646603.1|CB646603
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATT
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGEST: gi|29664761|gb|CB661036.1|CB661036
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
EST: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATG GTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
genomic: GAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGgtaaaaagtt ... tcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTG
ttcccttagttattcttaagcagtttgcacataattctggcatcttcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAG
catcttctttt CT-rich tract
ttagttattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttttgactgtttcttccatacagggtacagattcctcctaattcccttagttattcttaagcagtttgcacataattctggcatcttcttttgcagGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT