Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttaccagaaaaaaaaagaagtcaaatgtggaagtactaattatagatgataaccactcagttaagatatgaatattaatttaacatctctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATACACCAAGAAGGGGATGCAATGGGTCAAAACAACAGAAGGCCTACGAGAT

Basic information

species Oryza sativa
transcript LOC_Os12g26290.6
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g26290.6 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G312997_T01 (Zea mays), 3'ss of exon 9
---tgttaccagaaaaaaaaagaagtcaaatgtggaagtactaattatagatgataaccactcagttaagatatgaatattaatttaacatctctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATACACCAAGAAGGGGATGCAATGGGTCAAAACAACAGAAGGCCTACGAGAT
   ||||||||| |||||   |||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
gaatgttaccagcaaaaa---gaagtcaaatgtggaagtactagtttgagatgataaccactaagttaagatatgaatattaatttaacatctctataaacagGAGACTGGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGAAAACATACACAAAGAAGGGGATGCAATGGGTCAAAACAACTGAAGGCCTACGGGAT

upper sequence: LOC_Os12g26290.6 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 9
tgttaccagaaaaaaaaagaagtcaaatgtggaagtactaattatagatgataaccactcagttaagatatgaatattaatttaacatctctaaaa-acagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATACACCAAGAAGGGGATGCAATGGGTCAAAACAACAGAAGGCCTACGAGAT
       |  |||| |||  | |  ||| |  || ||  |  | ||  |||  |    | | | |   |||         ||   |||   |  ||  ||||||||| |  |||||  | || || |||||||||||||| ||||| |||||||| ||||||||  |  ||||||| || || || ||  | ||   ||||
----gtaaacaaaacaaaataatggaatattaaaatag-acctttaattga--attggttattgaccgtatttggtgggtttggccatgcgtggaatgcagGAGGCTAGGGGCAGACAGGTTCTTCACAAGCAATTTCAACGAGGAGACATACACAAAGAAGGGACTTGAATGGGTGAACACCACGGAGAGTCTGAAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628821|gb|CB633832.1|CB633832
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29674052|gb|CB670327.1|CB670327
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|86869314|gb|CI339038.1|CI339038
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|86870250|gb|CI319356.1|CI319356
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29665953|gb|CB662228.1|CB662228
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|86822267|gb|CI357875.1|CI357875
EST:     ATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: ATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29623096|gb|CB628107.1|CB628107
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29677262|gb|CB673537.1|CB673537
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|18386400|gb|BM419598.1|BM419598
EST:     TTGCCATAAGCGAAACAGCATTCAACATTTTCATTNTGAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTGCCATAAGCGAAACAGCATTCAACATTTTCATT-TTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29626273|gb|CB631284.1|CB631284
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|25800115|gb|CA756076.1|CA756076
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29622061|gb|CB627072.1|CB627072
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29623849|gb|CB628860.1|CB628860
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29626126|gb|CB631137.1|CB631137
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29613621|gb|CB618634.1|CB618634
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625599|gb|CB630610.1|CB630610
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29615924|gb|CB620936.1|CB620936
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|89190915|gb|CI392768.1|CI392768
EST:     TGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|86870180|gb|CI318094.1|CI318094
EST:     CATTCAACATTTTCAGTTGTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGA-GAAACATA
genomic: CATTCAACATTTTCA-TTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29679635|gb|CB675910.1|CB675910
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29622414|gb|CB627425.1|CB627425
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29613585|gb|CB618598.1|CB618598
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29617673|gb|CB622685.1|CB622685
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29628686|gb|CB633697.1|CB633697
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|22307369|gb|BQ908591.1|BQ908591
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625533|gb|CB630544.1|CB630544
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29615000|gb|CB620013.1|CB620013
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29629208|gb|CB634219.1|CB634219
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|33675490|gb|CF303729.1|CF303729
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|88481228|gb|CI418499.1|CI418499
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625520|gb|CB630531.1|CB630531
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29626851|gb|CB631862.1|CB631862
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29614957|gb|CB619970.1|CB619970
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|22305868|gb|BQ907090.1|BQ907090
EST:     ACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: ACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|22305768|gb|BQ906990.1|BQ906990
EST:     ATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: ATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29615979|gb|CB620991.1|CB620991
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|22305068|gb|BQ906290.1|BQ906290
EST:     TTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625912|gb|CB630923.1|CB630923
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29627805|gb|CB632816.1|CB632816
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625916|gb|CB630927.1|CB630927
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29626294|gb|CB631305.1|CB631305
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29623659|gb|CB628670.1|CB628670
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29665952|gb|CB662227.1|CB662227
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625788|gb|CB630799.1|CB630799
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29613657|gb|CB618670.1|CB618670
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29625831|gb|CB630842.1|CB630842
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29624044|gb|CB629055.1|CB629055
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29627803|gb|CB632814.1|CB632814
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29622491|gb|CB627502.1|CB627502
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29623095|gb|CB628106.1|CB628106
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29622940|gb|CB627951.1|CB627951
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|29623590|gb|CB628601.1|CB628601
EST:     TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTGCCATAAGCGAAACAGCATTCAACATTTTCATTTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|22306847|gb|BQ908069.1|BQ908069
EST:     TTTAATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: TTTAATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
EST: gi|88490349|gb|CI427621.1|CI427621
EST:     AATGGCATCAAG                         GAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA
genomic: AATGGCATCAAGgtaacattta ... ctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgataaccactcagttaagatatgaatattaatttaacatctctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATACACCAAGAAGGGGATGCAATGGGTCAAAACAACAGAAGGCCTACGAGAT
                                        catctct  CT-rich tract
                 ttaagatatgaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttaccagaaaaaaaaagaagtcaaatgtggaagtactaattatagatgataaccactcagttaagatatgaatattaatttaacatctctaaaaacagGAGGCTCGAAGCAGATCGATTTTTTACAAGCAATTTCAATGAGGAAACATACACCAAGAAGGGGATGCAATGGGTCAAAACAACAGAAGGCCTACGAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG