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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatgcatgcatgccttatattatggaacaactttaaaaagtagttgtgccttatattatgaaatggagggagttaatgaaaacatcatctgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCTGACTTGGTTGAGAAAGTTAATGGGTTACTTGATGAGGTTCAGAAAAACT

Basic information

species Oryza sativa
transcript LOC_Os12g25710.4
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29612729|gb|CB617742.1|CB617742
EST:     GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAG                         GCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
genomic: GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggt ... tgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
EST: gi|29665238|gb|CB661513.1|CB661513
EST:     GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAG                         GCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
genomic: GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggt ... tgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
EST: gi|29622778|gb|CB627789.1|CB627789
EST:     GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAG                         GCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
genomic: GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggt ... tgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
EST: gi|29616050|gb|CB621062.1|CB621062
EST:     GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAG                         GCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT
genomic: GCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggt ... tgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgccttatattatgaaatggagggagttaatgaaaacatcatctgcttttcagGCCCGTGTTGTTAGGCGAGACAATGGTGCAAAAGCTGATATTCCTACGGCTGACTTGGTTGAGAAAGTTAATGGGTTACTTGATGAGGTTCAGAAAAACT
                          agttaat  putative branch site (score: 4)
                                           tctgcttttc  putative PPT
      ttatattatgaaat  TA-rich tract