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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttgcactagttattaacataacattatgaactatttacactggattactaacattttctactcaacatgggcatcttccattttcgtgctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG

Basic information

species Oryza sativa
transcript LOC_Os12g25710.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g25710.3 (Oryza sativa), 3'ss of exon 10
lower sequence: AC202120.3_FGT003 (Zea mays), 3'ss of exon 1
gtgttgcactagttattaacataacattatgaacta----tttacactggattactaacat-tttctactcaacatgggcatcttccattttcgtgctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG
     |    | ||   |   || ||  ||||||||    |||||     | |  ||   |  |||  |    ||||  | | |    || |  | |   | |||||||||||||| |||||||| |||||||||||||| || || |||||||| || ||||||||||| |||||||| |||||||| || |||||||
---gagagacaattggaagtttatcaccatgaactagcattttacctaccagttgtattgtacttccgcctgccatg--cttgtaaatttgttttccccatacagGAAGTTGAGAAAGATGTGAAAGCTCGGACAAAAGGGGAACTCGGAGCTGCGAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG

upper sequence: LOC_Os12g25710.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 10
--gtgttgcactagttattaacataacattatgaactatttacactggattactaacattttctactcaacatgggcatcttccattttcgtgctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG
   || |  |  |   | || | |  | |  ||  || |||||     | | |||   |  | ||| |    |  |  | |    || |  | |   | |||||| |||||||  |||| ||  ||||||||||||| || || |||||||| || ||||||||||| |||||||| |||||||| || |||||||
caatgat-tatcatgaactagcttttcttggtgctctctttacctacaagttctattgtact-tacgcgtgctatgtctgtaaatttcttttccgtatacagGAAATTGAGAAAAATGTAAAAACTCGGACAAAAGGGGAACTTGGAGCTGCAAAAACATTGTGTACTCCATTTGAGCAGCCAGAACTTCCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88254641|gb|CI353465.1|CI353465
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88842104|gb|CI081360.1|CI081360
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88270301|gb|CI385559.1|CI385559
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|29665238|gb|CB661513.1|CB661513
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|29612729|gb|CB617742.1|CB617742
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88470176|gb|CI407447.1|CI407447
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88983148|gb|CI020712.1|CI020712
EST:     TGGCTCTGAATGACCAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86833961|gb|CI338332.1|CI338332
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86842058|gb|CI338426.1|CI338426
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88551694|gb|CI481774.1|CI481774
EST:     GCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: GCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86499222|gb|CI141855.1|CI141855
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88836444|gb|CI078341.1|CI078341
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|27577132|gb|CA999826.1|CA999826
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88990278|gb|CI107704.1|CI107704
EST:     TGGCTCTGAATGACGAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86889159|gb|CI315770.1|CI315770
EST:     GGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATATGAAGGCTC-GACAAAAGGTGACCTGGGAACTGCC
genomic: GGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88269396|gb|CI380694.1|CI380694
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86833249|gb|CI334844.1|CI334844
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAATTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86887924|gb|CI298035.1|CI298035
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|89189417|gb|CI048956.1|CI048956
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88273250|gb|CI388706.1|CI388706
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86528422|gb|CI168628.1|CI168628
EST:     TGGCTCTGAATGACAGAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACTAAAGGTGACCTGGGAGCGGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|33811199|gb|CF331489.1|CF331489
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGAACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88462958|gb|CI522069.1|CI522069
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88366088|gb|CI548335.1|CI548335
EST:     ACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: ACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88448925|gb|CI557997.1|CI557997
EST:     GAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: GAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88518606|gb|CI446260.1|CI446260
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88268800|gb|CI377704.1|CI377704
EST:     GCTCTGAATGACAAAAAATTTATCCTGGCTCCATGGTGTGATGAAGAG                         GAATTTGAGAAGGATGTGAAGGGTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: GCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88482240|gb|CI419511.1|CI419511
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88469935|gb|CI407206.1|CI407206
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86847262|gb|CI285286.1|CI285286
EST:     TGGCTCTGAATGACCAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86593850|gb|CI260079.1|CI260079
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|89191144|gb|CI392997.1|CI392997
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88223382|gb|CI223231.1|CI223231
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88431904|gb|CI560149.1|CI560149
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86428070|gb|CI073167.1|CI073167
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|15856943|gb|BI809755.1|BI809755
EST:     AAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAACTTGAGAAGGATGTGAAGGCTCGGACCAAAGGTGACCTGGGAGCTGCC
genomic: AAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|29616050|gb|CB621062.1|CB621062
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|12404673|gb|AU166274.1|AU166274
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|89197069|gb|CI021909.1|CI021909
EST:     TGGCTCTGAATGACCAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|89198536|gb|CI016621.1|CI016621
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88383797|gb|CI545948.1|CI545948
EST:     AAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: AAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86528432|gb|CI168638.1|CI168638
EST:     GGCTCTGAATGACAGAAAGTTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACGAAAGGTGACCTGGGAGCTGCC
genomic: GGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88262750|gb|CI366524.1|CI366524
EST:     CTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: CTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|87009350|gb|CI313823.1|CI313823
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88553620|gb|CI483744.1|CI483744
EST:     GGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: GGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|89195522|gb|CI051635.1|CI051635
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88906375|gb|CI375447.1|CI375447
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|29622778|gb|CB627789.1|CB627789
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88486216|gb|CI423487.1|CI423487
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88443099|gb|CI546671.1|CI546671
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|88995830|gb|CI037159.1|CI037159
EST:     TGGCTCTGAATGACCAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
EST: gi|86841149|gb|CI342905.1|CI342905
EST:     TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAG                         GAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC
genomic: TGGCTCTGAATGACAAAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGgtacgtgaga ... gctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattactaacattttctactcaacatgggcatcttccattttcgtgctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG
   tactaac  putative branch site (score: 0)
      taacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgttgcactagttattaacataacattatgaactatttacactggattactaacattttctactcaacatgggcatcttccattttcgtgctggttcagGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGAGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC