1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttggttcctttcctagtctactggcatttattccttgcaaaaccttgtaaaaattgtcttggacatagttttgtgctttacacattatttgtaaccatttatcttttggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG
species | Oryza sativa |
transcript | LOC_Os12g19290.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAACATCCAGGAATAG CTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAAEST: gi|88833981|gb|CI077462.1|CI077462
genomic: GAACATCCAGGAATAGgttggttcct ... ggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAA
EST: TGAACTATCAGATGATCCTGAACATCCAGGAATAG CTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAAEST: gi|58694229|gb|CK082916.1|CK082916
genomic: TGAACTATCAGATGATCCTGAACATCCAGGAATAGgttggttcct ... ggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAA
EST: TACCTACATAAACCTTGAACTATCAGATGATCCTGAACATCCAGGAATAG CTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAA
genomic: TACCTACAAAAACCTTGAACTATCAGATGATCCTGAACATCCAGGAATAGgttggttcct ... ggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAA
acatagttttgtgctttacacattatttgtaaccatttatcttttggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG
ttgtaac putative branch site (score: 8)
tcttttg putative PPT
tttacacattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttcctttcctagtctactggcatttattccttgcaaaaccttgtaaaaattgtcttggacatagttttgtgctttacacattatttgtaaccatttatcttttggctctgcagCTCAAGTAAAGAAAAAGAATAACAAGCCAACGAGGCGGACCTTTAAATCAATATTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA