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gtaggcaaagctcaataagttttcactgcttcccaaagtaaatttattagaccgtttactgtgtaccatgttgatgtaattgatctaatagactgaattttatggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAG AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCEST: gi|88998204|gb|CI038089.1|CI038089
genomic: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaag ... ggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
EST: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAG AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCEST: gi|58585967|gb|CF984275.1|CF984275
genomic: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaag ... ggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
EST: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAG AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCEST: gi|58611417|gb|CK039129.1|CK039129
genomic: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaag ... ggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
EST: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAG AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCEST: gi|29657715|gb|CB653990.1|CB653990
genomic: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaag ... ggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
EST: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAG AAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
genomic: CCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaag ... ggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTC
ctgtgtaccatgttgatgtaattgatctaatagactgaattttatggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG
atctaat putative branch site (score: 44)
taattgatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcaaagctcaataagttttcactgcttcccaaagtaaatttattagaccgtttactgtgtaccatgttgatgtaattgatctaatagactgaattttatggatgtgcagAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG