1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttgtttgtgcatttcaagctatactggatagaattatcttttgtagtgccttcaattgatgaagcctaacttaaattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATACTTCACTTAGAGATGAAGTGAACCGGATCAGAAAGGAGTATGATGAGC
species | Oryza sativa |
transcript | LOC_Os12g13170.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATEST: gi|29626016|gb|CB631027.1|CB631027
genomic: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgttt ... aattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
EST: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATEST: gi|29659468|gb|CB655743.1|CB655743
genomic: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgttt ... aattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
EST: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATEST: gi|25804027|gb|CA759988.1|CA759988
genomic: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgttt ... aattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
EST: GGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATEST: gi|29676440|gb|CB672715.1|CB672715
genomic: GGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgttt ... aattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
EST: GAAACCAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
genomic: GAAAACAATCCAACAGGGAGTCTGCTCGCAGATCTAGGTTGCGTAAGCAGgtatttgttt ... aattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAAT
tagaattatcttttgtagtgccttcaattgatgaagcctaacttaaattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATACTTCACTTAGAGATGAAGTGAACCGGATCAGAAAGGAGTATGATGAGC
gcctaac putative branch site (score: 15)
taacttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtttgtgcatttcaagctatactggatagaattatcttttgtagtgccttcaattgatgaagcctaacttaaattctgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGAAGTTTTAAAGCAAGAAAATACTTCACTTAGAGATGAAGTGAACCGGATCAGAAAGGAGTATGATGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG