Sequence
atgc intronic sequence ATGC exonic sequencegtaaaacctaagaggaagctataatgttgccttttgtttcttacattgctttcccagtgacactccacaaataatgatgatattgtactcttgggacttaatttgatatataatcctacaacagGTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGGTAAACTTCTACAT
Basic information
species | Oryza sativa |
transcript | LOC_Os12g10784.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g10784.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G168510_T01 (Zea mays), 3'ss of exon 4
gtaaaacctaagaggaagctataatgttgccttttgtttcttacattgctttcccagtgacac-tccacaaataatgatgatattgtactcttgggacttaatttgatatataatcctacaacagGTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGGTAAACTTCTACAT
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----------------------------gtaaagagatgcggacatgaacaactcgatggtatattaacataatctgctgttatgctcaacattaaacggatcttattgcataatccca---cagGTACATGATGACCCCTTGAATGCACCATGCGATGGCCCAACTCAATGG--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88252381|gb|CI350809.1|CI350809EST: GCATCCCAA-GACTTCTGTTGCTGTCGGAGTTGATGGTATTTTCATGGAG GTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGGTA
genomic: GCATCGCAAGGACTTCTGTTGCTGTCGGAGTTGATGGTATTTTCATGGAGgtaaaaccta ... cctacaacagGTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataatgatgatattgtactcttgggacttaatttgatatataatcctacaacagGTACATGATGATCCCTTGAACGCACCTTGTGATGGCCCAACTCAATGGGTAAACTTCTACAT
ttaatttgatatataa TA-rich tract