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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaatcatgagttctgtttcctcatctaatgcatttcaaactgaagctgcttgatttcttaactgtacacagcaaatctgacggaaggtttacggttcagattttgccttttgcttgatttttttggtgcattagctaaattttggaacaatgtgcccagATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCAATTTTAAGCTTGCAATGAG

Basic information

species Oryza sativa
transcript LOC_Os12g07300.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687463|gb|CK076150.1|CK076150
EST:     TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAG                         ATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA
genomic: TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAGgtacaaaatc ... atgtgcccagATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA
EST: gi|2427894|gb|C72357.1|C72357
EST:     TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAG                         ATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA
genomic: TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAGgtacaaaatc ... atgtgcccagATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA
EST: gi|58608339|gb|CK036372.1|CK036372
EST:     TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAG                         ATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA
genomic: TGAAGTTAATGAGTCAAGCAAATGTGGATTTTTGGATCCATTTTATCAAGgtacaaaatc ... atgtgcccagATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttttgcttgatttttttggtgcattagctaaattttggaacaatgtgcccagATTTCAGACAAAGATTCAGGCGTCTCTTAGGAACATCTTTCCGGCATCTCAATTTTAAGCTTGCAATGAG
                            agctaaa  putative branch site (score: 3)
                         attagctaaatttt  TA-rich tract