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...acttactaccagtatctgctctagttttcaattttctagtgccaagagtgagatcctttcatcatgtactaaaactgcaactgtcaaattggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAATTAGGCAGGCAGCTCGATGTTTCTTGGCAATTGGCGAGTACCATAATC
species | Oryza sativa |
transcript | LOC_Os12g05680.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87040460|gb|CI195082.1|CI195082
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87041632|gb|CI196254.1|CI196254
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|88968885|gb|CI098962.1|CI098962
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: CAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|88956467|gb|CI092718.1|CI092718
genomic: CAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: AAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|88228663|gb|CI228143.1|CI228143
genomic: AAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: ACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87041136|gb|CI195758.1|CI195758
genomic: ACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|29641186|gb|CB646193.1|CB646193
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87041108|gb|CI195730.1|CI195730
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87040970|gb|CI195592.1|CI195592
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAEST: gi|87040449|gb|CI195071.1|CI195071
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
EST: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAG GCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
genomic: TGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGgtgaagtcct ... ggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACA
gagtgagatcctttcatcatgtactaaaactgcaactgtcaaattggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAATTAGGCAGGCAGCTCGATGTTTCTTGGCAATTGGCGAGTACCATAATC
tactaaa putative branch site (score: 2)
tttcc putative PPT
tactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttactaccagtatctgctctagttttcaattttctagtgccaagagtgagatcctttcatcatgtactaaaactgcaactgtcaaattggatttccagGCTGATAACTTGAGGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAATTAGGCAGGCAGCTCGATGTTTCTTGGCAATTGGCGAGTACCATAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - -atctgct
- - - - - - - - - - - - - - - - - - - -tgccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgca